Stanford Root

Schedule

Stanford Root

Schedule

BMDS 205

Bioinformatics for Stem Cell and Cancer Biology (STEMREM 205)

UNITS:3
GRADING:Medical Option (Med-Ltr-CR/NC)
LEVEL:Graduate
GER:—

For graduate and medical students. High-throughput technologies and data science are essential tools in modern stem cell biology and cancer research. Students will gain practical exposure to bioinformatics concepts and techniques required to address biological questions within these research areas. The beginning of the quarter is focused on foundational principles underlying bioinformatics and genomics. Focus for the remainder of the quarter is on direct, hands-on experience with applications to common research problems. Topics include analysis of bulk and single-cell sequencing data, single gene to whole-genome analysis, machine learning, and data visualization. Intended for biology students without a background in computer science, or for students in a quantitative discipline interested in gaining exposure to key challenges in stem cell and cancer genomics. Basic programming experience is strongly recommended.

Syllabus for selected term:
View Winter 2027 Syllabus

Sections

1 Term
Lecture 1Open
ID: 14802
0 / 10 enrolled
DAYS:Tuesday, Thursday
TIME:11 AM – 12 PM
LOCATION:TBD
INSTRUCTOR:
Newman, Aaron, Avagyan, Susie
3units

BMDS 205: Bioinformatics for Stem Cell and Cancer Biology (STEMREM 205)

3 units · Medical Option (Med-Ltr-CR/NC)

For graduate and medical students. High-throughput technologies and data science are essential tools in modern stem cell biology and cancer research. Students will gain practical exposure to bioinformatics concepts and techniques required to address biological questions within these research areas. The beginning of the quarter is focused on foundational principles underlying bioinformatics and genomics. Focus for the remainder of the quarter is on direct, hands-on experience with applications to common research problems. Topics include analysis of bulk and single-cell sequencing data, single gene to whole-genome analysis, machine learning, and data visualization. Intended for biology students without a background in computer science, or for students in a quantitative discipline interested in gaining exposure to key challenges in stem cell and cancer genomics. Basic programming experience is strongly recommended.

Offered in Winter 2027 at Stanford University.

Winter 2027 sections

  • Lecture — Tuesday Thursday 11:00 AM – 12:00 PM — Newman, Aaron, Avagyan, Susie (Graduate)

More BMDS courses

  • BMDS 173A: Foundations of Computational Human Genomics (CS 173A, DBIO 173A)
  • BMDS 201A: Biomedical Data Science Student Seminar (BMDS 201B, BMDS 201C)
  • BMDS 201B: Biomedical Data Science Student Seminar (BMDS 201A, BMDS 201C)
  • BMDS 201C: Biomedical Data Science Student Seminar (BMDS 201A, BMDS 201B)
  • BMDS 202: An overview of Biomedical Data Science
  • BMDS 210: Modeling Biomedical Systems (CS 270)
  • BMDS 212: Introduction to Biomedical Informatics Research Methodology (BIOE 212, CS 272, GENE 212)
  • BMDS 214: Representations and Algorithms for Computational Molecular Biology (BIOE 214, CS 274, GENE 214)
  • BMDS 215: Data Science for Medicine
  • BMDS 216: Representations and Algorithms for Molecular Biology: Lectures
  • BMDS 217: Translational Bioinformatics (BIOE 217, CS 275, GENE 217)
  • BMDS 218: Data Centric AI for Healthcare (CS 287)

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