Stanford Root

Schedule

Stanford Root

Schedule

STEMREM 205

Bioinformatics for Stem Cell and Cancer Biology (BMDS 205)

UNITS:3
GRADING:Medical Option (Med-Ltr-CR/NC)
LEVEL:Graduate
GER:—

For graduate and medical students. High-throughput technologies and data science are essential tools in modern stem cell biology and cancer research. Students will gain practical exposure to bioinformatics concepts and techniques required to address biological questions within these research areas. The beginning of the quarter is focused on foundational principles underlying bioinformatics and genomics. Focus for the remainder of the quarter is on direct, hands-on experience with applications to common research problems. Topics include analysis of bulk and single-cell sequencing data, single gene to whole-genome analysis, machine learning, and data visualization. Intended for biology students without a background in computer science, or for students in a quantitative discipline interested in gaining exposure to key challenges in stem cell and cancer genomics. Basic programming experience is strongly recommended.

Syllabus for selected term:
View Winter 2027 Syllabus

Sections

1 Term
Lecture 1Open
ID: 14803
0 / 30 enrolled
DAYS:Tuesday, Thursday
TIME:11 AM – 12 PM
LOCATION:TBD
INSTRUCTOR:
Newman, Aaron, Avagyan, Susie
3units

STEMREM 205: Bioinformatics for Stem Cell and Cancer Biology (BMDS 205)

3 units · Medical Option (Med-Ltr-CR/NC)

For graduate and medical students. High-throughput technologies and data science are essential tools in modern stem cell biology and cancer research. Students will gain practical exposure to bioinformatics concepts and techniques required to address biological questions within these research areas. The beginning of the quarter is focused on foundational principles underlying bioinformatics and genomics. Focus for the remainder of the quarter is on direct, hands-on experience with applications to common research problems. Topics include analysis of bulk and single-cell sequencing data, single gene to whole-genome analysis, machine learning, and data visualization. Intended for biology students without a background in computer science, or for students in a quantitative discipline interested in gaining exposure to key challenges in stem cell and cancer genomics. Basic programming experience is strongly recommended.

Offered in Winter 2027 at Stanford University.

Winter 2027 sections

  • Lecture — Tuesday Thursday 11:00 AM – 12:00 PM — Newman, Aaron, Avagyan, Susie (Graduate)

More STEMREM courses

  • STEMREM 199: Undergraduate Research
  • STEMREM 200: Stem Cell Intensive
  • STEMREM 201A: Stem Cell Biology & Regenerative Medicine
  • STEMREM 201B: Ethical Issues in Stem Cell Biology
  • STEMREM 203: Stem Cells Immersion: Applications in Medicine, Business and Law
  • STEMREM 223: Biology and Disease of Hematopoiesis (IMMUNOL 223)
  • STEMREM 250: Regenerative Medicine Seminar Series
  • STEMREM 280: Stem Cell Biology and Regenerative Medicine Journal Club
  • STEMREM 299: Directed Reading in Stem Cell Biology and Regenerative Medicine
  • STEMREM 370: Medical Scholars Research
  • STEMREM 399: Graduate Research
  • STEMREM 801: TGR Project

All STEMREM courses · All departments